Publications

June 2009

No publications from this lab yet.

Selected prior publications:

The cyIIIa cis-regulatory system. C.T. Brown and E.H. Davidson. In preparation. wet, cis-regulation
Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics. Pernthaler A, Dekas AE, Brown CT, Goffredi SK, Embaye T, Orphan VJ. Proc Natl Acad Sci USA. 2008 May 13;105(19):7052-7. [Link] microbial, metagenomics, dry
Computational approaches to finding and analyzing cis-regulatory elements. Brown CT. Methods Cell Biol. 2008;87:337-65. [Link] dry, regulatory genomics
High regulatory gene use in sea urchin embryogenesis: Implications for bilaterian development and evolution. Howard-Ashby M, Materna SC, Brown CT, Tu Q, Oliveri P, Cameron RA, Davidson EH. Dev Biol. 2006 Dec 1;300(1):27-34. [Link] dry, regulatory genomics
Sea Urchin Genome Sequencing Consortiums. Science. 2006 Nov 10;314(5801):941-52. [Link] genomics
Gene families encoding transcription factors expressed in early development of Strongylocentrotus purpuratus. M. Howard-Ashby, S.C. Materna, C.T. Brown, L. Chen, R.A. Cameron, and E.H. Davidson. Dev Biol. 2006 Aug 22 (epub). [Link] dry, genomics, large-scale
Anaerobic regulation by an atypical Arc system in Shewanella oneidensis. J.A. Gralnick, C.T. Brown, and D.K. Newman. Mol Microbiol. 2005 Jun;56(5):1347-57. [Link] microbial, regulatory genomics
Paircomp, FamilyRelationsII and Cartwheel: Tools for Interspecific Sequence Comparison. C. T. Brown (corresponding author), Y. Xie, E.H. Davidson, R.A. Cameron. BMC Bioinformatics. 2005 Mar 24;6(1):70. [Link] dry, regulatory genomics, animal
Evolutionary comparisons suggest many novel cAMP response protein binding sites in Escherichia coli. Brown CT, Callan CG Jr. Proc Natl Acad Sci USA. 2004 Feb 24;101(8):2404-9. [Link] dry, microbial, regulatory genomics
A genomic regulatory network for development. Davidson, E.H., Rast, J.P, Oliveri, P., Ransick, A., Calestani, C., Yuh, C.-H., Minokawa, T., Amore, G., Hinman, V., Arenas-Mena, C., Otim, O., Brown, C.T., Livi, C.B., Lee, P.Y, Revilla, R., Schilstra, M.J., Clarke, P.J.C., Rust, A.G., Pan, Z.J., Arnone, M.I., Rowen, L., Cameron, R.A., McClay, D.R., Hood, L., and Bolouri, H. Science 295, 1669-1678, 2002. [Link] gene regulatory networks

For all prior publications by Dr. Brown, search for 'brown ct' in PubMed (ignore the urology publications, that's a different 'brown ct').